Saved Data Results from the Workflow to Analysis Imputation for Microsatellite / Cell Datasets for Reconstructing Cell Lineage Maps
datasetposted on 09.04.2018 by Alan Shteyman, Ruchi Asthana, Russell Schwartz
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
These are the results of the pipeline I wrote for my research in order to determine how imputation method affects the underlying structure of a Microsatellite/Cell Dataset useful for reconstructing cell lineage maps. The analysis was done using KNN,Linear Regression and a novel method based on Fitch's Algorithm. The pipeline was applied to 3 datasets (Tree A, B and C) taken from Frumkin et al. 2005 and is in three different folders. Follow the instructions txt to easily load data into python for easy processing.