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Biological imaging software tools.

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posted on 2012-01-01, 00:00 authored by Kevin W. Eliceiri, Michael R. Berthold, Ilya G. Goldberg, Luis Ibáñez, B. B. Manjunath, Maryann E. Martone, Robert MurphyRobert Murphy, Hanchuan Peng, Anne L. Plant, Badrinath Roysam, Nico Stuurman, Jason R. Swedlow, Pavel Tomancak, Anne E. Carpenter

Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the inherent challenges and the overall status of available software for bioimage informatics, focusing on open-source options.

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© 2012 Li et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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2012-01-01

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