biology-1220.pdf (2.09 MB)
Download file

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Download (2.09 MB)
journal contribution
posted on 01.01.2011, 00:00 authored by Welkin H. Pope, Deborah Jacobs-Sera, Daniel A. Russell, Craig L. Peebles, Turi A. Alcoser, Lisa M. Alexander, Ian M. Bayles, Keshav Budwal, Ian W. Campbell, Lianne B. Cohen, Belle E. V. English, Laura Z. Filliger, Tyler M. Fox, Stephanie L. Guerra, Siping He, Kaitlin E. Healy, Jonathan JarvikJonathan Jarvik, Paul G. Jasinto, Antonio-Javier LopezAntonio-Javier Lopez, Andrew J. Medenbach, Rachel E. Pferdehirt, Michael J. Resiss, Judith Savitskaya, Kathryn E. Sheldon, Madav K. Shroff, Jasper V. Thompson, Hannah S. Wirtshafter

Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists.

History

Publisher Statement

© 2011 Hatfull et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Date

01/01/2011